Metabolic adaptation to vitamin auxotrophy by leaf-associated bacteria

Development evaluation

Linear regression on ln reworked knowledge was carried out utilizing linear_regression operate from sklearn. Datapoints that lied outdoors of log-linear scale had been omitted. Development charges had been solely calculated for cultures that carried out at the least 2 doublings in exponential section.

In depletion experiments (see Fig. 1 and Supplementary Fig. 2), development of cells cultivated on vitamin-free media was outlined to be deviating from the supplemented management if the next standards had been fulfilled. There needed to be at the least a 0.25 doubling distinction within the complete variety of doublings within the vitamin-free and vitamin-supplemented cultures. Moreover, in at the least two out of the three replicates the expansion fee after the 0.25 doubling separation needed to be decreased by 25%; within the remaining replicate, a ten% discount was thought of acceptable. The storage was outlined because the variety of doublings a pressure carried out with out the vitamin right now level. Stable R2A medium was obtained from Sigma.

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